BiobaseHTTPTools

Tools to query Bioinformatics HTTP services e.g. Entrez, Ensembl.

Latest on Hackage:1.0.0@rev:1

This package is not currently in any snapshots. If you're interested in using it, we recommend adding it to Stackage Nightly. Doing so will make builds more reliable, and allow stackage.org to host generated Haddocks.

GPL-3.0-only licensed by Florian Eggenhofer
Maintained by [email protected]

BiobaseHTTP provides tools to interface the Bioinformatics REST services, currently Entrez, Ensembl.

Usage instructions can be found in the README

Currently following Tools are included:

  • FetchSequences: Retrieves sequence in fasta format

  • AccessionToTaxId: Converts NCBI accession number to taxonomy id

  • GeneIdToGOTerms: Retrieve GOterms for a Ensembl GeneId

  • GeneIdToUniProtId Retrieves UniProtId for a Ensembl GeneId