CMCompare

Infernal covariance model comparison

http://www.tbi.univie.ac.at/software/cmcompare/

Latest on Hackage:

0.0.1.5

This package is not currently in any snapshots. If you're interested in using it, we recommend adding it to Stackage Nightly. Doing so will make builds more reliable, and allow stackage.org to host generated Haddocks.

GPL-3.0-only licensed by Christian Hoener zu Siederdissen, Ivo L. Hofacker

Maintained by [email protected]

Compares two Infernal covariance models. Returns the common MaxiMin score and the offending RNA sequence. High scores point toward low discriminative power of the two models. Based on:

"Christian Höner zu Siederdissen, and Ivo L. Hofacker. 2010. Discriminatory power of RNA family models. Bioinformatics 26, no. 18: 453–59"

http://bioinformatics.oxfordjournals.org/content/26/18/i453.long