phybin

Utility for clustering phylogenetic trees in Newick format based on Robinson-Foulds distance.

http://www.cs.indiana.edu/~rrnewton/projects/phybin/

Latest on Hackage:0.3

This package is not currently in any snapshots. If you're interested in using it, we recommend adding it to Stackage Nightly. Doing so will make builds more reliable, and allow stackage.org to host generated Haddocks.

BSD-3-Clause licensed and maintained by Ryan Newton

This package provides a libary and executable for dealing with Newick tree files.

It can do simple binning of identical trees or more complex clustering based on an all-to-all Robinson-Foulds distance matrix.

phybin produces output files that characterize the size and contents of each bin or cluster (including generating GraphViz-based visual representations of the tree topologies).